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Whats new in 4.18?

What's new in 4.18? 🍁

Posted: 18 Jun 2020

One of the most important changes introduced in this version is that we have switched from a Google login system based on Flask-OAuthlib to Authlib libraries. In order to support the new login system Scout administrators would need to modify the config settings as described in this updated guide.

This is a complete list of all changes introduced in this new release:

[4.18]

New features

  • Filter cancer variants on cytoband coordinates
  • Show dismiss reasons in a badge with hover for clinical variants
  • Show an ellipsis if 10 cases or more to display with loqusdb matches
  • A new blog post for version 4.17
  • Tooltip to better describe Tumor and Normal columns in cancer variants
  • Filter cancer SNVs and SVs by chromosome coordinates
  • Default export of Assertion method citation to clinVar variants submission file
  • Button to export up to 500 cancer variants, filtered or not
  • Rename samples of a clinVar submission file

Bugfixes

  • Apply default gene panel on return to cancer variantS from variant view
  • Revert to certificate checking when asking for Chanjo reports
  • scout download everything command failing while downloading HPO terms

Changes

  • Turn tumor and normal allelic fraction to decimal numbers in tumor variants page
  • Moved clinVar submissions code to the institutes blueprints
  • Changed name of clinVar export files to FILENAME.Variant.csv and FILENAME.CaseData.csv
  • Switched Google login libraries from Flask-OAuthlib to Authlib